"Was he really going to kill me?"
What? She was running away because she already believed he was going to kill her. Seriously, this is like a round robin where they get a new author every chapter, but each one can only seen the chapter preceding them for context of what in the world is going on.
This is why you always put human overrides in your AI.
Also, why send her to her room now? You already discussed all that meta-knowledge right in front of her.