They only conduct the treatment/indoctrine due to no threat infiltrating the space ship. If there is I am sure the A.I will choose different Law script.
First Impressions:
It's totally unreal that the MC being forced by the android to take that captain training while the ship was literally falling apart.
That android girl could have come along. He's still gonna be the sole survivor anyways. Unless they gonna make this into yet another harem story. Well maybe she got into another pod or somehow "survived" the crash just like that one air hostess who did just that from 25k feet. Go Google it.